Package: genepop 1.2.2

genepop: Population Genetic Data Analysis Using Genepop

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

Authors:François Rousset [aut, cre, cph], Jimmy Lopez [ctb], Alexandre Genin [ctb], Khalid Belkhir [ctb]

genepop_1.2.2.tar.gz
genepop_1.2.2.zip(r-4.5)genepop_1.2.2.zip(r-4.4)genepop_1.2.2.zip(r-4.3)
genepop_1.2.2.tgz(r-4.4-x86_64)genepop_1.2.2.tgz(r-4.4-arm64)genepop_1.2.2.tgz(r-4.3-x86_64)genepop_1.2.2.tgz(r-4.3-arm64)
genepop_1.2.2.tar.gz(r-4.5-noble)genepop_1.2.2.tar.gz(r-4.4-noble)
genepop_1.2.2.tgz(r-4.4-emscripten)genepop_1.2.2.tgz(r-4.3-emscripten)
genepop.pdf |genepop.html
genepop/json (API)
NEWS

# Install 'genepop' in R:
install.packages('genepop', repos = c('https://f-rousset.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.72 score 1 stars 53 scripts 452 downloads 92 mentions 33 exports 10 dependencies

Last updated 2 years agofrom:d970883044. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-win-x86_64NOTEOct 27 2024
R-4.5-linux-x86_64NOTEOct 27 2024
R-4.4-win-x86_64NOTEOct 27 2024
R-4.4-mac-x86_64NOTEOct 27 2024
R-4.4-mac-aarch64NOTEOct 27 2024
R-4.3-win-x86_64NOTEOct 27 2024
R-4.3-mac-x86_64NOTEOct 27 2024
R-4.3-mac-aarch64NOTEOct 27 2024

Exports:.check_bootstrap_args.check_gp_file_name.getDocDate.GIsolationByDistanceBetweenGroups.GIsolationByDistanceBetweenIndividuals.remove_temp_files.returnInfo.summary_GP_NULbasic_infoclean_workdirconversiondiploidizeFstgenedivFisgenepopExamplegetVersionGUIHWtable_analysisibdNm_privatenullspop_to_indivrelabel_allelessample_haploidset_restrictionsetMantelSeedsetRandomSeedstrucsummary.GP_outfiletest_difftest_HWtest_LDwrite_LD_tables

Dependencies:cligluelifecyclemagrittrRcppRcppProgressrlangstringistringrvctrs