Package: genepop 1.2.14

genepop: Population Genetic Data Analysis Using Genepop

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

Authors:François Rousset [aut, cre, cph], Jimmy Lopez [ctb], Alexandre Genin [ctb], Khalid Belkhir [ctb]

genepop_1.2.14.tar.gz
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genepop_1.2.14.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
genepop/json (API)
NEWS

# Install 'genepop' in R:

install.packages('genepop', repos = c('https://f-rousset.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

3.22 score 1 stars 75 scripts 1.1k downloads 92 mentions 25 exports 10 dependencies

Last updated from:b138e8891f. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	190
linux-devel-x86_64	OK	191
source / vignettes	OK	268
linux-release-arm64	OK	158
linux-release-x86_64	OK	171
macos-release-arm64	OK	142
macos-release-x86_64	OK	343
macos-oldrel-arm64	OK	172
macos-oldrel-x86_64	OK	365
windows-devel	OK	161
windows-release	OK	162
windows-oldrel	OK	162
wasm-release	OK	135

Exports:basic_info clean_workdir conversion diploidize Fst genedivFis genepopExample getVersion GUI HWtable_analysis ibd Nm_private nulls pop_to_indiv relabel_alleles sample_haploid set_restriction setMantelSeed setRandomSeed struc summary.GP_outfile test_diff test_HW test_LD write_LD_tables

Dependencies:cli glue lifecycle magrittr Rcpp RcppProgress rlang stringi stringr vctrs

Help page	Topics
Population genetic analyses using the Genepop software	genepop-package genepop
Allele and genotype frequencies	basic_info
Removing files created by Genepop	clean_workdir
Exact test on a single contingency table	Contingency-test struc
File conversions	conversion
Tests of genic and genotypic differentiation	Differentiation test_diff
Fst (or rho_ST) estimation	Fst
Gene diversities and Fis (or rho_IS)	genedivFis
Copy an example file from the Genepop package distribution	genepopExample
Call an experimental GUI for Genepop	GUI
Tests of Hardy-Weinberg genotypic proportions	Hardy-Weinberg HWtable_analysis test_HW
Isolation by distance	IBD ibd
Tables and exact test for genotypic linkage disequilibrium	Linkage test_LD write_LD_tables
Various data manipulation utilities	diploidize manipulation pop_to_indiv relabel_alleles sample_haploid
Private allele method	Nm_private
Estimation of allele frequencies under genotyping failure.	nulls
Programming utilities	genepop-utils getVersion set_restriction
Set random generator seed for Mantel test	setMantelSeed
Set random generator seed (except for Mantel test)	setRandomSeed

Package: genepop 1.2.14

genepop: Population Genetic Data Analysis Using Genepop

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Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)