{
  "_id": "6a1165ecacfb0bcc41cf0641",
  "Package": "genepop",
  "Type": "Package",
  "Title": "Population Genetic Data Analysis Using Genepop",
  "Version": "1.2.14",
  "Date": "2026-01-22",
  "Authors@R": "c(person(\"François\", \"Rousset\", role = c(\"aut\", \"cre\", \"cph\"),\nemail = \"francois.rousset@umontpellier.fr\",\ncomment = c(ORCID = \"0000-0003-4670-0371\")),\nperson(\"Jimmy\",\"Lopez\", role=\"ctb\"),\nperson(\"Alexandre\", \"Genin\", role=\"ctb\"),\nperson(\"Khalid\",\"Belkhir\", role=\"ctb\"))",
  "Maintainer": "François Rousset <francois.rousset@umontpellier.fr>",
  "Description": "Makes the Genepop software available in R. This software\nimplements a mixture of traditional population genetic methods\nand some more focused developments: it computes exact tests for\nHardy-Weinberg equilibrium, for population differentiation and\nfor genotypic disequilibrium among pairs of loci; it computes\nestimates of F-statistics, null allele frequencies, allele\nsize-based statistics for microsatellites, etc.; and it\nperforms analyses of isolation by distance from pairwise\ncomparisons of individuals or population samples.",
  "License": "CeCILL-2",
  "Encoding": "UTF-8",
  "Config/build/clean-inst-doc": "false",
  "RoxygenNote": "7.2.3",
  "ByteCompile": "true",
  "URL": "https://www.r-project.org,\nhttps://gitlab.mbb.univ-montp2.fr/francois/genepop",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-23 08:24:25 UTC",
    "User": "root"
  },
  "Author": "François Rousset [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-4670-0371>), Jimmy Lopez [ctb],\nAlexandre Genin [ctb], Khalid Belkhir [ctb]",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://f-rousset.r-universe.dev",
  "Date/Publication": "2026-01-23 09:40:23 UTC",
  "RemoteUrl": "https://github.com/cran/genepop",
  "RemoteRef": "HEAD",
  "RemoteSha": "b138e8891f7c98843729194f3a72c3e258c9cc58",
  "MD5sum": "698764df9aebd3b8608f0a6fae92af49",
  "_user": "f-rousset",
  "_type": "src",
  "_file": "genepop_1.2.14.tar.gz",
  "_fileid": "b72e9624cc2f5ffc7944bf1465566d31e124a5f1dc2d0ae5e8808cc831da7e8f",
  "_filesize": 1432962,
  "_sha256": "b72e9624cc2f5ffc7944bf1465566d31e124a5f1dc2d0ae5e8808cc831da7e8f",
  "_created": "2026-05-23T08:24:25.000Z",
  "_published": "2026-05-23T08:31:40.221Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77509236464,
      "time": 190,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175632362"
    },
    {
      "job": 77509236461,
      "time": 191,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175632456"
    },
    {
      "job": 77509236475,
      "time": 158,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175629695"
    },
    {
      "job": 77509236462,
      "time": 171,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175630722"
    },
    {
      "job": 77509236469,
      "time": 172,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175628163"
    },
    {
      "job": 77509236465,
      "time": 365,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175644753"
    },
    {
      "job": 77509236463,
      "time": 142,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175626337"
    },
    {
      "job": 77509236470,
      "time": 343,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175642303"
    },
    {
      "job": 77508994014,
      "time": 268,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175615960"
    },
    {
      "job": 77509236426,
      "time": 135,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175627621"
    },
    {
      "job": 77509236457,
      "time": 161,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7175630120"
    },
    {
      "job": 77509236453,
      "time": 162,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7175629934"
    },
    {
      "job": 77509236454,
      "time": 162,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7175630009"
    }
  ],
  "_buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/genepop",
  "_commit": {
    "id": "b138e8891f7c98843729194f3a72c3e258c9cc58",
    "author": "François Rousset <francois.rousset@umontpellier.fr>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.2.14\n",
    "time": 1769161223
  },
  "_maintainer": {
    "name": "François Rousset",
    "email": "francois.rousset@umontpellier.fr",
    "login": "f-rousset",
    "description": "",
    "uuid": 19538343,
    "orcid": "0000-0003-4670-0371"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppProgress",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.12.10",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "shiny",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-35",
      "n": 1
    },
    {
      "week": "2026-04",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.2.11",
      "date": "2025-08-27"
    },
    {
      "name": "1.2.14",
      "date": "2026-01-23"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "f-rousset",
      "count": 9,
      "uuid": 19538343
    }
  ],
  "_userbio": {
    "uuid": 19538343,
    "type": "user",
    "name": "f-rousset"
  },
  "_downloads": {
    "count": 1094,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/genepop"
  },
  "_mentions": 92,
  "_searchresults": 75,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/genepop.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "f-rousset",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2017-06-14"
    },
    {
      "version": "1.0.5",
      "date": "2017-08-23"
    },
    {
      "version": "1.1.2",
      "date": "2019-06-23"
    },
    {
      "version": "1.1.3",
      "date": "2019-08-22"
    },
    {
      "version": "1.1.4",
      "date": "2019-12-07"
    },
    {
      "version": "1.1.7",
      "date": "2020-02-23"
    },
    {
      "version": "1.2.2",
      "date": "2023-01-20"
    },
    {
      "version": "1.2.11",
      "date": "2025-08-27"
    },
    {
      "version": "1.2.14",
      "date": "2026-01-23"
    }
  ],
  "_exports": [
    "basic_info",
    "clean_workdir",
    "conversion",
    "diploidize",
    "Fst",
    "genedivFis",
    "genepopExample",
    "getVersion",
    "GUI",
    "HWtable_analysis",
    "ibd",
    "Nm_private",
    "nulls",
    "pop_to_indiv",
    "relabel_alleles",
    "sample_haploid",
    "set_restriction",
    "setMantelSeed",
    "setRandomSeed",
    "struc",
    "summary.GP_outfile",
    "test_diff",
    "test_HW",
    "test_LD",
    "write_LD_tables"
  ],
  "_help": [
    {
      "page": "genepop-package",
      "title": "Population genetic analyses using the Genepop software",
      "topics": [
        "genepop-package",
        "genepop"
      ]
    },
    {
      "page": "basic_info",
      "title": "Allele and genotype frequencies",
      "topics": [
        "basic_info"
      ]
    },
    {
      "page": "clean_workdir",
      "title": "Removing files created by Genepop",
      "topics": [
        "clean_workdir"
      ]
    },
    {
      "page": "Contingency-test",
      "title": "Exact test on a single contingency table",
      "topics": [
        "Contingency-test",
        "struc"
      ]
    },
    {
      "page": "conversion",
      "title": "File conversions",
      "topics": [
        "conversion"
      ]
    },
    {
      "page": "Differentiation",
      "title": "Tests of genic and genotypic differentiation",
      "topics": [
        "Differentiation",
        "test_diff"
      ]
    },
    {
      "page": "Fst",
      "title": "Fst (or rho_ST) estimation",
      "topics": [
        "Fst"
      ]
    },
    {
      "page": "genedivFis",
      "title": "Gene diversities and Fis (or rho_IS)",
      "topics": [
        "genedivFis"
      ]
    },
    {
      "page": "genepopExample",
      "title": "Copy an example file from the Genepop package distribution",
      "topics": [
        "genepopExample"
      ]
    },
    {
      "page": "GUI",
      "title": "Call an experimental GUI for Genepop",
      "topics": [
        "GUI"
      ]
    },
    {
      "page": "Hardy-Weinberg",
      "title": "Tests of Hardy-Weinberg genotypic proportions",
      "topics": [
        "Hardy-Weinberg",
        "HWtable_analysis",
        "test_HW"
      ]
    },
    {
      "page": "IBD",
      "title": "Isolation by distance",
      "topics": [
        "IBD",
        "ibd"
      ]
    },
    {
      "page": "Linkage",
      "title": "Tables and exact test for genotypic linkage disequilibrium",
      "topics": [
        "Linkage",
        "test_LD",
        "write_LD_tables"
      ]
    },
    {
      "page": "manipulation",
      "title": "Various data manipulation utilities",
      "topics": [
        "diploidize",
        "manipulation",
        "pop_to_indiv",
        "relabel_alleles",
        "sample_haploid"
      ]
    },
    {
      "page": "Nm_private",
      "title": "Private allele method",
      "topics": [
        "Nm_private"
      ]
    },
    {
      "page": "nulls",
      "title": "Estimation of allele frequencies under genotyping failure.",
      "topics": [
        "nulls"
      ]
    },
    {
      "page": "genepop-utils",
      "title": "Programming utilities",
      "topics": [
        "genepop-utils",
        "getVersion",
        "set_restriction"
      ]
    },
    {
      "page": "setMantelSeed",
      "title": "Set random generator seed for Mantel test",
      "topics": [
        "setMantelSeed"
      ]
    },
    {
      "page": "setRandomSeed",
      "title": "Set random generator seed (except for Mantel test)",
      "topics": [
        "setRandomSeed"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "glue",
    "lifecycle",
    "magrittr",
    "Rcpp",
    "RcppProgress",
    "rlang",
    "stringi",
    "stringr",
    "vctrs"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 3.2151085810530935,
  "_indexed": true,
  "_nocasepkg": "genepop",
  "_universes": [
    "f-rousset"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:40.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "83b983eefc3c10aa0c3e0c6362d24ab7987e39d8533259dbf39a92e881d2e2cf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:36.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "44d2a3c0f6b3508ad2d2e504dd3cccdfd5611e85d13ee469bdac9dbac5df7d12",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:11.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "20eb8c9b6dd593e0f4a667b3230c3c5f2444fc95072c607394978ad60dbf6fdd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:18.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "b11c1446acae24d3a0702e54314db5f1e19d208216ae661fe3ff706bd117f71c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:04.000Z",
      "arch": "aarch64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "fd92149c795ceb558cb912b84646662f87e2cb24eda151a55723c5532f48f653",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.14",
      "date": "2026-05-23T08:29:11.000Z",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "97edc611286ab1ab4b62caf2896ce0638d8b54fc558f3b01ba0c5b69864ff6f9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.14",
      "date": "2026-05-23T08:26:45.000Z",
      "arch": "aarch64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "0e11659de0bc7fe62191e6fe66ba4d13e9a3d24feaccea3ace1dfd299e60f235",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.14",
      "date": "2026-05-23T08:28:33.000Z",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "01d30eb47d9a767b29e147409343de703880bd483c3b74500a91be465c930179",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.14",
      "date": "2026-05-23T08:27:02.000Z",
      "arch": "emscripten",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "e7db13b62b1b92256d942c18c294edc9fb9a076f78558756fed1d130d90f9b0d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.14",
      "date": "2026-05-23T08:26:32.000Z",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "bd919e45e2da36d8b654eba1514bd852686b34398f4b04167a9a6fb22d6c7154",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.14",
      "date": "2026-05-23T08:26:16.000Z",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "aa67c6c0dc3a6b4f314bb04685eca1a01b8764fcdceedd69f2f3d8c09c72f999",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2.14",
      "date": "2026-05-23T08:26:22.000Z",
      "arch": "x86_64",
      "commit": "b138e8891f7c98843729194f3a72c3e258c9cc58",
      "fileid": "03f073c6ac36259083ba899a7d40f40e91c5d9ed91b5435aa6186252c514e287",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/f-rousset/actions/runs/26327960983"
    }
  ]
}