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  "Title": "Population Genetic Data Analysis Using Genepop",
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  "Date": "2026-07-08",
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    "summary.GP_outfile",
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      "page": "genepop-package",
      "title": "Population genetic analyses using the Genepop software",
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        "genepop"
      ]
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    {
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      "title": "Allele and genotype frequencies",
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      "page": "clean_workdir",
      "title": "Removing files created by Genepop",
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        "test_diff"
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        "ibd"
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