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      "page": "adjlg",
      "title": "Simulated data set for testing sparse-precision code",
      "topics": [
        "adjlg",
        "adjlgMat"
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      "page": "AIC",
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        "AIC.HLfit",
        "extractAIC",
        "extractAIC.HLfit",
        "get_any_IC"
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    },
    {
      "page": "algebra",
      "title": "Control of matrix-algebraic methods",
      "topics": [
        "algebra",
        "sparse_precision"
      ]
    },
    {
      "page": "aliases",
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        "aliases"
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      "page": "anova.HLfit",
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        "anova.HLfit",
        "anova.LMLT"
      ]
    },
    {
      "page": "arabidopsis",
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      "topics": [
        "arabidopsis"
      ]
    },
    {
      "page": "ARp",
      "title": "Random effect with AR(p) (autoregressive of order p) or ARMA(p,q) structure.",
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        "ARp"
      ]
    },
    {
      "page": "as_LMLT",
      "title": "Conversion to input for procedures from lmerTest package",
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        "class:LMLTslots",
        "LMLTslots",
        "LMLTslots-class",
        "model.matrix.LMLTslots"
      ]
    },
    {
      "page": "autoregressive",
      "title": "Fitting autoregressive models",
      "topics": [
        "adjacency",
        "AR1",
        "autoregressive",
        "CAR"
      ]
    },
    {
      "page": "beta_resp",
      "title": "Beta-distribution family object",
      "topics": [
        "beta_resp"
      ]
    },
    {
      "page": "betabin",
      "title": "Beta-binomial family object",
      "topics": [
        "betabin"
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    },
    {
      "page": "blackcap",
      "title": "Genetic polymorphism in relation to migration in the blackcap",
      "topics": [
        "blackcap"
      ]
    },
    {
      "page": "CauchyCorr",
      "title": "Cauchy correlation function and Cauchy formula term",
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        "CauchyCorr",
        "CauchyCorr.default",
        "CauchyCorr.dgCMatrix",
        "CauchyCorr.dsCMatrix"
      ]
    },
    {
      "page": "clinics",
      "title": "Toy dataset for binomial response",
      "topics": [
        "clinics"
      ]
    },
    {
      "page": "COMPoisson",
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      "topics": [
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        "geometric"
      ]
    },
    {
      "page": "composite_ranef",
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      "topics": [
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        "confint.HLfit"
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    },
    {
      "page": "control.HLfit",
      "title": "Control parameters of the HLfit fitting algorithm",
      "topics": [
        "control.HLfit"
      ]
    },
    {
      "page": "convergence",
      "title": "Assessing convergence for fitted models",
      "topics": [
        "convergence"
      ]
    },
    {
      "page": "corMatern",
      "title": "Matern Correlation Structure as a corSpatial object",
      "topics": [
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        "coef<-.corMatern",
        "corFactor.corMatern",
        "corMatern",
        "corMatrix.corMatern",
        "getCovariate.corMatern",
        "Initialize.corMatern",
        "logDet.corMatern",
        "recalc.corMatern",
        "Variogram.corMatern"
      ]
    },
    {
      "page": "corr_family",
      "title": "'corr_family' objects",
      "topics": [
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        "print.corr_family",
        "SAR_WWt"
      ]
    },
    {
      "page": "corrFamily",
      "title": "Using corrFamily constructors and descriptors.",
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        "corrFamily"
      ]
    },
    {
      "page": "corrFamily-definition",
      "title": "corrFamily definition",
      "topics": [
        "corrFamily-definition"
      ]
    },
    {
      "page": "corrFamily-design",
      "title": "Designing new corrFamily descriptors for parametric correlation families",
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        "corrFamily-design"
      ]
    },
    {
      "page": "corrHLfit",
      "title": "Fits a mixed model, typically a spatial GLMM.",
      "topics": [
        "corrHLfit"
      ]
    },
    {
      "page": "corrMatrix",
      "title": "Using the 'corrMatrix' and 'distmatrix' arguments",
      "topics": [
        "corrMatrix",
        "distMatrix"
      ]
    },
    {
      "page": "covStruct",
      "title": "Specifying correlation structures",
      "topics": [
        "as_precision",
        "covStruct",
        "Predictor"
      ]
    },
    {
      "page": "diallel",
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        "diallel",
        "ranGCA"
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    },
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      "page": "div_info",
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      "topics": [
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        "div_info"
      ]
    },
    {
      "page": "DoF",
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        "DoF"
      ]
    },
    {
      "page": "dofuture",
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      "topics": [
        "dofuture"
      ]
    },
    {
      "page": "dopar",
      "title": "Interface for parallel computations",
      "topics": [
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        "dopar"
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    },
    {
      "page": "drop1.HLfit",
      "title": "Drop all possible single fixed-effect terms from a model",
      "topics": [
        "drop1",
        "drop1.HLfit",
        "drop1.LMLT"
      ]
    },
    {
      "page": "PAIRfn",
      "title": "Correlated random effects in dyadic interactions",
      "topics": [
        "dyad",
        "mm",
        "mmfn",
        "PAIRfn"
      ]
    },
    {
      "page": "eval_replicate",
      "title": "Evaluating bootstrap replicates",
      "topics": [
        ".eval_replicate2",
        "eval_replicate"
      ]
    },
    {
      "page": "extractors",
      "title": "Functions to extract various components of a fit.",
      "topics": [
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        "deviance",
        "deviance.HLfit",
        "dev_resids",
        "df.residual",
        "df.residual.HLfit",
        "extractors",
        "family",
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        "fitted",
        "fitted.HLfit",
        "fixef",
        "fixef.HLfit",
        "fixef.HLfitlist",
        "formula",
        "formula.HLfit",
        "getDistMat",
        "get_drawSizes",
        "logLik",
        "logLik.HLfit",
        "model.frame.HLfit",
        "model.matrix.HLfit",
        "nobs",
        "nobs.HLfit",
        "print.ranef",
        "ranef",
        "ranef.HLfit",
        "response",
        "terms",
        "terms.HLfit",
        "weights",
        "weights.HLfit"
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    },
    {
      "page": "extreme_eig",
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      "topics": [
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        "regularize"
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    },
    {
      "page": "fitme",
      "title": "Fitting function for fixed- and mixed-effect models with GLM response.",
      "topics": [
        "fitme"
      ]
    },
    {
      "page": "fitmv",
      "title": "Fitting multivariate responses",
      "topics": [
        "fitmv"
      ]
    },
    {
      "page": "fix_predVar",
      "title": "Prediction from models with nearly-singular covariance matrices",
      "topics": [
        "fix_predVar"
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    },
    {
      "page": "fixed",
      "title": "Fixing some parameters",
      "topics": [
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        "etaFix",
        "fixed",
        "keepInREML",
        "ranCoefs",
        "ranFix",
        "ranPars"
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    },
    {
      "page": "fixed.LRT",
      "title": "Likelihood ratio test of fixed effects.",
      "topics": [
        "fixedLRT"
      ]
    },
    {
      "page": "freight",
      "title": "Freight dataset",
      "topics": [
        "freight"
      ]
    },
    {
      "page": "get_cPredVar",
      "title": "Estimation of prediction variance with bootstrap correction",
      "topics": [
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      ]
    },
    {
      "page": "get_inits_from_fit",
      "title": "Initiate a fit from another fit",
      "topics": [
        "get_inits_from_fit"
      ]
    },
    {
      "page": "get_matrix",
      "title": "Extract matrices from a fit",
      "topics": [
        "get_matrix",
        "get_ZALMatrix"
      ]
    },
    {
      "page": "get_fittedPars",
      "title": "Operations on lists of parameters",
      "topics": [
        "get_fittedPars",
        "get_ranPars",
        "remove_from_parlist"
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    },
    {
      "page": "get_RLRSim_args",
      "title": "Extractors of arguments for functions from package RLRsim",
      "topics": [
        "get_RLRsim_args",
        "get_RLRTSim_args"
      ]
    },
    {
      "page": "gof",
      "title": "Goodness of fit test",
      "topics": [
        "gof"
      ]
    },
    {
      "page": "good-practice",
      "title": "Clear and trustworthy formulas and prior weights",
      "topics": [
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        "good-practice"
      ]
    },
    {
      "page": "Gryphon",
      "title": "Gryphon data",
      "topics": [
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